![[Experimental]](figures/lifecycle-experimental.svg)
A tidier for models generated with svyVGAM::svy_vglm().
Term names will be updated to be consistent with generic models. The original
term names are preserved in an "original_term" column. Depending on the
model, additional column "group", "component" and/or "y.level" may be
added to the results.
Arguments
- x
(
svy_vglm)
AsvyVGAM::svy_vglm()model.- conf.int
(
logical)
Whether or not to include a confidence interval in the tidied output.- conf.level
(
numeric)
The confidence level to use for the confidence interval (between0ans1).- ...
Additional parameters passed to
parameters::model_parameters().
See also
Other custom_tieders:
tidy_broom(),
tidy_multgee(),
tidy_parameters(),
tidy_vgam(),
tidy_with_broom_or_parameters(),
tidy_zeroinfl()
Examples
# \donttest{
library(svyVGAM)
#> Loading required package: VGAM
#> Loading required package: stats4
#> Loading required package: splines
#> Loading required package: survey
#> Loading required package: grid
#> Loading required package: Matrix
#> Loading required package: survival
#>
#> Attaching package: ‘survey’
#> The following object is masked from ‘package:VGAM’:
#>
#> calibrate
#> The following object is masked from ‘package:graphics’:
#>
#> dotchart
mod <- svy_vglm(
Species ~ Sepal.Length + Sepal.Width,
family = multinomial(),
design = survey::svydesign(~1, data = iris)
)
#> Warning: No weights or probabilities supplied, assuming equal probability
#> Warning: 5 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: 15 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: 45 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: 68 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 72 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 75 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 75 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 75 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 75 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 75 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: 75 diagonal elements of the working weights variable 'wz' have been replaced by 1.819e-12
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted values close to 0 or 1
#> Warning: some quantities such as z, residuals, SEs may be inaccurate due to convergence at a half-step
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted probabilities numerically 0 or 1 occurred
#> Warning: fitted probabilities numerically 0 or 1 occurred
mod |> tidy_svy_vglm(exponentiate = TRUE)
#> original_term term group estimate std.error conf.level
#> 1 (Intercept):1 (Intercept) 1 1.145503e+40 1.261243e+41 0.95
#> 2 (Intercept):2 (Intercept) 2 4.632101e+05 1.442845e+06 0.95
#> 3 Sepal.Length:1 Sepal.Length 1 4.850629e-15 1.760312e-14 0.95
#> 4 Sepal.Length:2 Sepal.Length 2 1.492052e-01 7.378632e-02 0.95
#> 5 Sepal.Width:1 Sepal.Width 1 8.789873e+11 2.663515e+12 0.95
#> 6 Sepal.Width:2 Sepal.Width 2 6.673158e-01 5.168039e-01 0.95
#> conf.low conf.high statistic df.error p.value component
#> 1 4.863346e+30 2.698094e+49 8.3774732 Inf 5.407607e-17 log(mu[,1]/mu[,3])
#> 2 1.033679e+03 2.075728e+08 4.1882600 Inf 2.811014e-05 log(mu[,2]/mu[,3])
#> 3 3.951429e-18 5.954454e-12 -9.0822020 Inf 1.064001e-19 log(mu[,1]/mu[,3])
#> 4 5.660309e-02 3.933036e-01 -3.8469580 Inf 1.195935e-04 log(mu[,2]/mu[,3])
#> 5 2.315605e+09 3.336574e+14 9.0759552 Inf 1.126847e-19 log(mu[,1]/mu[,3])
#> 6 1.462571e-01 3.044710e+00 -0.5222945 Inf 6.014653e-01 log(mu[,2]/mu[,3])
#> y.level
#> 1 setosa
#> 2 versicolor
#> 3 setosa
#> 4 versicolor
#> 5 setosa
#> 6 versicolor
# }